Holm L, Sander C (1996) Alignment of three-dimensional protein structures: network server for database searching.Holm L, Sander C (1998) Dictionary of recurrent domains in protein structures.Holm L, Park J (2000) DaliLite workbench for protein structure comparison.Holm L, Kääriäinen S, Rosenström P, Schenkel A (2008) Searching protein structure databases with DaliLite v.3.Holm L, Rosenström P (2010) Dali server: conservation mapping in 3D.Holm L, Laakso LM (2016) Dali server update.Holm L (2020) Using Dali for Protein Structure Comparison.Holm L, Sander C (1995) Dali: a network tool for protein structure comparison.Holm L, Sander C (1996) Mapping the protein universe.Hasegawa H, Holm L (2009) Advances and pitfalls of protein structural alignment.Holm L (2020) DALI and the Persistence of Protein Shape.Holm L (2022) Dali server: structural unification of protein families.All against all structure comparison - returns a structural similarity dendrogram for a set of structures specified by the user.Pairwise structure comparison - compares one query structure against those specified by the user.Hierarchical AF-DB search - compares one query structure against a species subset of the AlphaFold DatabaseĪnd two types of structure comparisons of user selected structures:.Exhaustive PDB25 search - compares one query structure against a representative subset of the Protein Data Bank. ![]()
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